silva-138_classifiers

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Feature Classifiers for different variable regions of Prokaryotic 16S rRNA genes.

Database: SILVA release_138 nr99 SSU
Tutorials: QIIME 2 - Feature Classifier & RESCRIPt
QIIME2 version: 2021.4
scikit-learn version: 0.24.1

Primers

• V1-V2: 27f & 338r
• V3: 341f & 518r
• V3-V4: 341f & 805r
• V4: 515f & 806r

Workflows with Files

• Initial workflow to download and curate the SILVA DB
• Workflow for V1-V2 classifier
• Workflow for V3 classifier
• Workflow for V3-V4 classifier
• Workflow for V4 classifier

Direct Download Directories

• V1-V2 classifier
• V3 classifier
• V3-V4 classifier
• V4 classifier
• Full length classifier

Other classifiers

NCBI
Silva 138.2 full length

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